PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5373_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 166aa    MW: 18552.6 Da    PI: 5.0276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5373_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.4e-0743811255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  RrC5373_p1 43 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 81
                77788899********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.0043180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-124195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.27E-74184No hitNo description
SMARTSM003536.6E-44286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-44381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-104593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSNDSQRSER TEELRENNDE YSPRLLKRSR IDTLSPLPSF KVRKEKLGDR ITALQQLVSP  60
FGKTDTASVL NEAVEYIKFL QEQVTVLSNP DQNTRGSVQQ QQCSDKNSTN STQEQEECSS  120
RKHVDLASRG LCLMPISASY PVAAAAASAA EMNTSDFWSL TFAMNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396624.13e-87hypothetical protein EUTSA_v10029319mg
SwissprotQ9M0X83e-74BH114_ARATH; Transcription factor bHLH114
TrEMBLA0A078IAP94e-90A0A078IAP9_BRANA; BnaA09g19880D protein
STRINGBra029562.1-P1e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.17e-75bHLH family protein